HUGE

Gene/Protein Characteristic Table for KIAA0715

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK01674
Accession No. :	AB018258
Description :	Probable phospholipid-transporting ATPase VB.
HUGO Gene Name :	ATPase, class V, type 10B (ATP10B)
Clone Name :	pf08610 [Vector Info]
Flexi ORF Clone :	pF1KA0715
Source :	Human brain (hippocampus)
Note :	We replaced hj02886, former representative clones for KIAA0715 with pf08610. (1999/6/16)

Features of the cloned DNA sequence	Description

Length: 7380 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2320 bp

Genome contig ID gi51511721r_159822718
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
GTCATCCTTTATTAAAAATAAACATGGTTTTCCAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGTTGCCTGCCAACCTAAGTTCACATTATTCTTCTTTTATATCATTATCA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 5 r 159922718 160211624 26 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 1498 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAG10372	100.0	phospholipid-tr...	synthetic construct
O94823	99.9	Probable phosph...	Homo sapiens
EAW61546	94.5	hCG1979529, iso...	Homo sapiens
XP_001086695	88.6	ATPase, Class V...	Macaca mulatta
XP_546266	85.5	similar to Pote...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB011138	7.3e-128	50.3	KIAA0566
AB040920	9e-122	57.7	KIAA1487
AB075819	4.8e-59	31.4	KIAA1939
AB032963	4.6e-58	31.9	KIAA1137
AB028944	5.8e-54	32.1	KIAA1021

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR001757 468 482 PR00119 ATPase

IPR001757 1090 1109 PR00119 ATPase

HMMPfam IPR013200 1086 1107 PF08282 HAD superfamily hydrolase-like

HMMTigr IPR006539 103 1370 TIGR01652 Phospholipid-translocating P-type ATPase

IPR001757 400 487 TIGR01494 ATPase

IPR001757 919 969 TIGR01494 ATPase

IPR001757 1059 1170 TIGR01494 ATPase

ScanRegExp IPR001757 470 476 PS00154 ATPase

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001757	468	482	PR00119	ATPase
IPR001757	1090	1109	PR00119	ATPase
HMMPfam	IPR013200	1086	1107	PF08282	HAD superfamily hydrolase-like
HMMTigr	IPR006539	103	1370	TIGR01652	Phospholipid-translocating P-type ATPase
IPR001757	400	487	TIGR01494	ATPase
IPR001757	919	969	TIGR01494	ATPase
IPR001757	1059	1170	TIGR01494	ATPase
ScanRegExp	IPR001757	470	476	PS00154	ATPase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 128 HRWANLYFLFLVILNWMPSMEVF 150 SECONDARY 23

2 153 EITMLPLAIVLFVIMIKDGMEDF 175 PRIMARY 23

3 351 NIDIFFCIGILILMCLIGAVGHS 373 PRIMARY 23

4 394 FLPSALGGFYMFLTMIILLQVLI 416 PRIMARY 23

5 419 SLYVSIELVKLGQVFFLSNDLD 440 SECONDARY 22

6 1159 CYVNLLFWYQFFCGFSSSTMID 1180 SECONDARY 22

7 1230 STFWISMVDAFYQSLICFFIPYL 1252 SECONDARY 23

8 1297 GSFLMYFLVSLLYNATCVICNSP 1319 PRIMARY 23

9 1335 FYLVCFLTPVVALLPRYFFLSLQ 1357 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	128	HRWANLYFLFLVILNWMPSMEVF	150	SECONDARY	23
2	153	EITMLPLAIVLFVIMIKDGMEDF	175	PRIMARY	23
3	351	NIDIFFCIGILILMCLIGAVGHS	373	PRIMARY	23
4	394	FLPSALGGFYMFLTMIILLQVLI	416	PRIMARY	23
5	419	SLYVSIELVKLGQVFFLSNDLD	440	SECONDARY	22
6	1159	CYVNLLFWYQFFCGFSSSTMID	1180	SECONDARY	22
7	1230	STFWISMVDAFYQSLICFFIPYL	1252	SECONDARY	23
8	1297	GSFLMYFLVSLLYNATCVICNSP	1319	PRIMARY	23
9	1335	FYLVCFLTPVVALLPRYFFLSLQ	1357	SECONDARY	23

RH mapping information	Description

Chromosome No.

: 5

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AGAACCTCCTCAGCAAAGATG
Primer_r	: ATGGCAGAGGCAGTGAAACAG
PCR product length	: 156 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2320 bp
Genome contig ID	gi51511721r_159822718
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- GTCATCCTTTATTAAAAATAAACATGGTTTTCCAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AGTTGCCTGCCAACCTAAGTTCACATTATTCTTCTTTTATATCATTATCA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	5	r	159922718	160211624	26	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA0715

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information