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Gene/Protein Characteristic Table for KIAA0747

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Product ID	ORK04975
Accession No	AB018290
Description	extended synaptotagmin-like protein 1
Clone name	hk04143
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4026 bp) Predicted protein sequence (1072 aa)
Source	Human adult brain

Length: 4026 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1072 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR000008	638	650	PR00360	C2 calcium-dependent membrane targeting
	IPR000008	662	675	PR00360	C2 calcium-dependent membrane targeting
	IPR000008	684	692	PR00360	C2 calcium-dependent membrane targeting
HMMPfam	IPR000008	289	375	PF00168	C2 calcium-dependent membrane targeting
	IPR000008	438	526	PF00168	C2 calcium-dependent membrane targeting
	IPR000008	617	703	PF00168	C2 calcium-dependent membrane targeting
	IPR000008	768	845	PF00168	C2 calcium-dependent membrane targeting
	IPR000008	956	1045	PF00168	C2 calcium-dependent membrane targeting
HMMSmart	IPR000008	288	390	SM00239	C2 calcium-dependent membrane targeting
	IPR000008	437	541	SM00239	C2 calcium-dependent membrane targeting
	IPR000008	616	718	SM00239	C2 calcium-dependent membrane targeting
	IPR000008	767	860	SM00239	C2 calcium-dependent membrane targeting
	IPR000008	955	1060	SM00239	C2 calcium-dependent membrane targeting
ProfileScan	IPR000008	289	375	PS50004	C2 calcium-dependent membrane targeting
	IPR000008	431	526	PS50004	C2 calcium-dependent membrane targeting
	IPR000008	617	703	PS50004	C2 calcium-dependent membrane targeting
	IPR000008	768	845	PS50004	C2 calcium-dependent membrane targeting
	IPR000008	957	1045	PS50004	C2 calcium-dependent membrane targeting
ScanRegExp	IPR000276	849	865	PS00237	Rhodopsin-like GPCR superfamily

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	20	LLVLIPVYLAGAVGLSVGFVLFG	42	PRIMARY	23

RT-PCR-ELISA

Experimental conditions

Chromosome No. 12
Experimental conditions

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