Gene/Protein Characteristic Table for FLJ00006
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Product ID ORK06810
Accession No AK000006
Clone name as00006
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4219 bp)
Predicted protein sequence (401 aa)
Source Human spleen
Rouge ID mFLJ00006 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4219 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning Warning
Features of the protein sequence
Description

Length: 401 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAA92231 3.5e-170 100.0 FLJ00006 protei...
Homo sapiens
EAW60380 1.6e-161 99.7 RUN and TBC1 do...
Homo sapiens
BAG62655 4.2e-133 98.5 unnamed protein...
Homo sapiens
BAG58399 5.2e-133 99.4 unnamed protein...
Homo sapiens
BAG59984 5.2e-133 99.4 unnamed protein...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB028978 5.6e-34 38.4 KIAA1055
AB020689 8.7e-30 36.2 KIAA0882
AB014576 4.8e-28 39.2 KIAA0676
AB029031 7.3e-19 30.0 KIAA1108
AB011175 1.4e-18 29.3 KIAA0603
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000195 55 271 PF00566 RabGAP/TBC domain
HMMSmart IPR000195 55 272 SM00164 RabGAP/TBC domain
ProfileScan IPR000195 58 246 PS50086 RabGAP/TBC domain
Experimental conditions
Primer_f
Primer_r
PCR conditions test
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