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Gene/Protein Characteristic Table for KIAA0334

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Product ID	ORK00509
Accession No	AB002332
Description	clock circadian regulator, transcript variant 2
Clone name	hg01015
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5715 bp) Predicted protein sequence (848 aa)
HaloTag ORF Clone	FHC00509
Flexi ORF Clone	FXC00509
Source	Human adult brain
Rouge ID	mKIAA0334 by Kazusa Mouse cDNA Project

Length: 5715 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 848 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001067	51	66	PR00785	Nuclear translocator
	IPR001067	102	125	PR00785	Nuclear translocator
	IPR001067	277	294	PR00785	Nuclear translocator
HMMPfam	IPR001092	37	87	PF00010	Basic helix-loop-helix dimerisation region bHLH
	IPR013767	111	178	PF00989	PAS fold
	IPR013655	288	381	PF08447	PAS fold-3
HMMSmart	IPR001092	42	92	SM00353	Basic helix-loop-helix dimerisation region bHLH
	IPR000014	111	177	SM00091	PAS
	IPR000014	266	332	SM00091	PAS
	IPR001610	338	381	SM00086	PAC motif
ProfileScan	IPR001092	35	87	PS50888	Basic helix-loop-helix dimerisation region bHLH
	IPR000014	109	179	PS50112	PAS
	IPR000014	287	334	PS50112	PAS

RT-PCR

Experimental conditions

Chromosome No. 4
Experimental conditions

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