FLJ00416

Product ID	ORK07496
Accession No	AK160385
Clone name	sj04686
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4684 bp) Predicted protein sequence (221 aa)
Source	Human spleen
Rouge ID	mFLJ00416 by Kazusa Mouse cDNA Project

	N-terminal truncation	Coding interruption
cloned DNA seq	No warning	Warning

Length: 221 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD18728	6.2e-79	100.0	FLJ00416 protei...	Homo sapiens
EAW72392	6.4e-68	100.0	hypothetical pr...	Homo sapiens
NP_116225	6.4e-68	100.0	FLT3-interactin...	Homo sapiens
Q96SL8	9.2e-68	99.5	Flt3-interactin...	Homo sapiens
XP_512915	1.3e-67	99.5	hypothetical pr...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB075831	5.8e-11	40.6	KIAA1951
AB007872	6.5e-11	47.7	KIAA0412
AB037852	9.2e-11	43.6	KIAA1431
AB040941	1e-10	50.0	KIAA1508
AB014528	1.3e-10	48.6	KIAA0628

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR007087	51	74	PD000003	Zn-finger
FPrintScan	IPR007086	50	63	PR00048	Zn-finger
FPrintScan	IPR007086	94	103	PR00048	Zn-finger
HMMPfam	IPR007087	51	73	PF00096	Zn-finger
	IPR007087	79	101	PF00096	Zn-finger
	IPR007087	107	129	PF00096	Zn-finger
	IPR007087	135	158	PF00096	Zn-finger
HMMSmart	IPR007087	51	73	SM00355	Zn-finger
	IPR007087	79	101	SM00355	Zn-finger
	IPR007087	107	129	SM00355	Zn-finger
	IPR007087	135	158	SM00355	Zn-finger
ProfileScan	IPR007087	51	78	PS50157	Zn-finger
	IPR007087	79	106	PS50157	Zn-finger
	IPR007087	107	134	PS50157	Zn-finger
	IPR007087	135	163	PS50157	Zn-finger
ScanRegExp	IPR007087	53	73	PS00028	Zn-finger
	IPR007087	81	101	PS00028	Zn-finger
	IPR007087	109	129	PS00028	Zn-finger
	IPR007087	136	158	PS00028	Zn-finger
	IPR006058	183	191	PS00197	2Fe-2S ferredoxin

Primer_f
Primer_r
PCR conditions	test