HUGE

Gene/Protein Characteristic Table for KIAA1469

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00234
Accession No. :	AB040902
Description :	Leucine-rich repeat transmembrane protein FLRT3 precursor.
HUGO Gene Name :
Clone Name :	fj01881 [Vector Info]
Flexi ORF Clone :	pF1KA1469
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4723 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Features of the protein sequence	Description

Length: 662 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9NZU0	100.0	Leucine-rich re...	Homo sapiens
XP_001084137	99.8	fibronectin leu...	Macaca mulatta
AAQ88685	99.8	FLRT3 [Homo sap...	Homo sapiens
BAB55023	99.7	unnamed protein...	Homo sapiens
XP_607863	97.6	similar to FLRT...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB007865	1.4e-91	47.3	KIAA0405
AB046800	1.6e-17	30.1	KIAA1580
AB020725	7.4e-16	29.6	KIAA0918
AB011538	3.8e-13	24.9	KIAA0814
AB058757	5.8e-13	33.2	KIAA1854

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR001611 169 182 PR00019 Leucine-rich repeat

IPR001611 283 296 PR00019 Leucine-rich repeat

HMMPfam IPR000372 43 70 PF01462 Leucine-rich repeat

IPR001611 72 95 PF00560 Leucine-rich repeat

IPR001611 97 115 PF00560 Leucine-rich repeat

IPR001611 142 166 PF00560 Leucine-rich repeat

IPR001611 168 186 PF00560 Leucine-rich repeat

IPR001611 189 211 PF00560 Leucine-rich repeat

IPR001611 213 237 PF00560 Leucine-rich repeat

IPR001611 239 257 PF00560 Leucine-rich repeat

IPR001611 261 283 PF00560 Leucine-rich repeat

IPR001611 285 307 PF00560 Leucine-rich repeat

IPR000483 344 369 PF01463 Cysteine-rich flanking region

IPR003961 418 498 PF00041 Fibronectin

HMMSmart IPR000372 43 75 SM00013 Leucine-rich repeat

IPR003591 95 118 SM00369 Leucine-rich repeat

IPR003591 140 165 SM00369 Leucine-rich repeat

IPR003591 169 189 SM00369 Leucine-rich repeat

IPR003591 211 236 SM00369 Leucine-rich repeat

IPR003591 237 260 SM00369 Leucine-rich repeat

IPR003591 261 282 SM00369 Leucine-rich repeat

IPR003591 283 306 SM00369 Leucine-rich repeat

IPR000483 318 369 SM00082 Cysteine-rich flanking region

ProfileScan IPR003961 419 514 PS50853 Fibronectin

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001611	169	182	PR00019	Leucine-rich repeat
IPR001611	283	296	PR00019	Leucine-rich repeat
HMMPfam	IPR000372	43	70	PF01462	Leucine-rich repeat
IPR001611	72	95	PF00560	Leucine-rich repeat
IPR001611	97	115	PF00560	Leucine-rich repeat
IPR001611	142	166	PF00560	Leucine-rich repeat
IPR001611	168	186	PF00560	Leucine-rich repeat
IPR001611	189	211	PF00560	Leucine-rich repeat
IPR001611	213	237	PF00560	Leucine-rich repeat
IPR001611	239	257	PF00560	Leucine-rich repeat
IPR001611	261	283	PF00560	Leucine-rich repeat
IPR001611	285	307	PF00560	Leucine-rich repeat
IPR000483	344	369	PF01463	Cysteine-rich flanking region
IPR003961	418	498	PF00041	Fibronectin
HMMSmart	IPR000372	43	75	SM00013	Leucine-rich repeat
IPR003591	95	118	SM00369	Leucine-rich repeat
IPR003591	140	165	SM00369	Leucine-rich repeat
IPR003591	169	189	SM00369	Leucine-rich repeat
IPR003591	211	236	SM00369	Leucine-rich repeat
IPR003591	237	260	SM00369	Leucine-rich repeat
IPR003591	261	282	SM00369	Leucine-rich repeat
IPR003591	283	306	SM00369	Leucine-rich repeat
IPR000483	318	369	SM00082	Cysteine-rich flanking region
ProfileScan	IPR003961	419	514	PS50853	Fibronectin

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 12 LTMISAAWSIFLIGTKIGLFLQV 34 PRIMARY 23

2 542 LAAIIGGAVALVTIALLALVCWY 564 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	12	LTMISAAWSIFLIGTKIGLFLQV	34	PRIMARY	23
2	542	LAAIIGGAVALVTIALLALVCWY	564	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CAAAGATCAAGAATACTGCCC

Primer_r
: ACATACAAGACTGGCCAAAGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 20

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Primer_f	: CAAAGATCAAGAATACTGCCC
Primer_r	: ACATACAAGACTGGCCAAAGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1469

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information