Gene/Protein Characteristic Table for KIAA1739
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Product ID ORK06763
Accession No AB051526
Description sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
Clone name pj00464
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (3776 bp)
Predicted protein sequence (963 aa)
Source Human brain (hippocampus)
Rouge ID mKIAA1739 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 3776 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 884 bp
Genome contig ID gi89161199r_96789206
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
GTATTTTTATATTGACAAATAAAATGGAGAAAATG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAACGATTGCTCTGATGGGGCTAAGATGTTTGGGCTAAAGCCTTTCTGGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 2 r 96889206 96896394 13 99.5 Perfect prediction
Features of the protein sequence
Description

Length: 963 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW71325 0 100.0 sema domain, im...
Homo sapiens
Q9C0C4 0 96.8 Semaphorin-4C; ...
Homo sapiens
AAQ89201 0 96.6 SEMA4C [Homo sa...
Homo sapiens
XP_001100467 0 94.1 semaphorin 4C [...
Macaca mulatta
XP_515634 0 84.2 semaphorin 4C [...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB046839 1.1e-61 41.3 KIAA1619
AB051532 1.3e-54 40.5 KIAA1745
AB002329 1.6e-30 33.6 KIAA0331
AB058772 6.8e-21 35.6 KIAA1869
AB040912 1.7e-19 33.7 KIAA1479
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001627 183 611 PF01403 Semaphorin/CD100 antigen
IPR002165 629 681 PF01437 Plexin
HMMSmart IPR001627 183 611 SM00630 Semaphorin/CD100 antigen
IPR003659 629 681 SM00423 Plexin/semaphorin/integrin
IPR003599 692 776 SM00409 Immunoglobulin subtype
ProfileScan IPR001627 160 627 PS51004 Semaphorin/CD100 antigen
IPR007110 686 767 PS50835 Immunoglobulin-like

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 25 HSRLCLLLCWTLIEAVGSR 43 SECONDARY 19
2 730 PGSFLYDARLQALVVMAA 747 SECONDARY 18
3 765 RLAAEGYLVAVVAGPSVTLEAR 786 SECONDARY 22
4 791 NLGLVWLAVVALGAVCLVLLLLV 813 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f ATGCTGGCCTTCTTGTGGATG
Primer_r CACACTCTCAGGTACATAGGC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 2
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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